Research

Publications

  1. Lee SY, Parot VJ, Bouma BE, Villiger M. Reciprocity-induced symmetry in the round-trip transmission through complex systems. APL Photonics. 2020 Oct;5(10). doi: 10.1063/5.0021285. Epub 2020 Oct 7. PubMed PMID: 33088915; PubMed Central PMCID: PMC7575207
  2. Lee H, Kim GH, Villiger M, Jang H, Bouma BE, Kim CS. Linear-in-wavenumber actively-mode-locked wavelength-swept laser. Opt Lett. 2020 Oct 1;45(19):5327-5330. doi: 10.1364/OL.397715. PubMed PMID: 33001885; PubMed Central PMCID: PMC7574329.
  3. Braaf B, Donner S, Uribe-Patarroyo N, Bouma BE, Vakoc BJ. A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements. Sci Rep. 2020 Jun 15;10(1):9611. doi: 10.1038/s41598-020-66158-8. PubMed PMID: 32541887; PubMed Central PMCID: PMC7295995.
  4. Keahey PA, Bouma BE, Villiger M. Automated noise estimation in polarization-sensitive optical coherence tomography. Opt Lett. 2020 May 15;45(10):2748-2751. doi: 10.1364/OL.390334. PubMed PMID: 32412457; PubMed Central PMCID: PMC7506521.
  5. Ferris NG, Cannon TM, Villiger M, Bouma BE, Uribe-Patarroyo N. Forward multiple scattering dominates speckle decorrelation in whole-blood flowmetry using optical coherence tomography.Biomed Opt Express. 2020 Apr 1;11(4):1947-1966. doi: 10.1364/BOE.384539. eCollection 2020 Apr 1. PubMed PMID: 32341859; PubMed Central PMCID: PMC7173878.
  6. Doradla P, Otsuka K, Nadkarni A, Villiger M, Karanasos A, Zandvoort LJCV, Dijkstra J, Zijlstra F, Soest GV, Daemen J, Regar E, Bouma BE, Nadkarni SK. Biomechanical Stress Profiling of Coronary Atherosclerosis: Identifying a Multifactorial Metric to Evaluate Plaque Rupture Risk. JACC Cardiovasc Imaging. 2020 Mar;13(3):804-816. doi: 10.1016/j.jcmg.2019.01.033. Epub 2019 Apr 17. PubMed PMID: 31005542; NIHMSID:NIHMS1035390.
  7. Otsuka K, Villiger M, Karanasos A, van Zandvoort LJC, Doradla P, Ren J, Lippok N, Daemen J, Diletti R, van Geuns RJ, Zijlstra F, van Soest G, Dijkstra J, Nadkarni SK, Regar E, Bouma BE. Intravascular Polarimetry in Patients With Coronary Artery Disease. JACC Cardiovasc Imaging. 2020 Mar;13(3):790-801. doi: 10.1016/j.jcmg.2019.06.015. Epub 2019 Aug 14. PubMed PMID: 31422135; PubMed Central PMCID: PMC7241775.
  8. Lippok N, Vakoc BJ. Resolving absolute depth in circular-ranging optical coherence tomography by using a degenerate frequency comb: publisher’s note. Opt Lett. 2020 Mar 1;45(5):1079. doi: 10.1364/OL.389085. PubMed PMID: 32108774; PubMed Central PMCID: PMC7213018.
  9. Eltony AM, Clouser F, Shao P, Pineda R 2nd, Yun SH. Brillouin Microscopy Visualizes Centralized Corneal Edema in Fuchs Endothelial Dystrophy. Cornea. 2020 Feb;39(2):168-171. doi: 10.1097/ICO.0000000000002191. PubMed PMID: 31658170; PubMed Central PMCID: PMC6940527
  10. Li Q, Karnowski K, Untracht G, Noble PB, Cense B, Villiger M, Sampson DD. Vectorial birefringence imaging by optical coherence microscopy for assessing fibrillar microstructures in the cornea and limbus. Biomed Opt Express. 2020 Feb 1;11(2):1122-1138. doi: 10.1364/BOE.382755. eCollection 2020 Feb 1. PubMed PMID: 32206403; PubMed Central PMCID: PMC7041478.
  11. Lee SY, Hui PC, Bouma B, Villiger M. Single-shot depth profiling by spatio-temporal encoding with a multimode fiber. Opt Express. 2020 Jan 20;28(2):1124-1138. doi: 10.1364/OE.383145. PubMed PMID: 32121828; PubMed Central PMCID: PMC7053500.
  12. Lippok N, Bouma BE, Vakoc BJ. Stable multi-megahertz circular-ranging optical coherence tomography at 1.3 µm. Biomed Opt Express. 2020 Jan 1;11(1):174-185. doi: 10.1364/BOE.11.000174. eCollection 2020 Jan 1. PubMed PMID: 32010508; PubMed Central PMCID: PMC6968766.
  13. Otsuka K, Villiger M, Nadkarni SK, Bouma BE. Intravascular Polarimetry for Tissue Characterization of Coronary Atherosclerosis. Circ Rep. 2019 Dec;1(12):550-557. doi: 10.1253/circrep.CR-19-0102. PubMed PMID: 32432174; PubMed Central PMCID: PMC7236778.
  14. Rico-Jimenez JJ, Campos-Delgado DU, Buja LM, Vela D, Jo JA. Intravascular optical coherence tomography method for automated detection of macrophage infiltration within atherosclerotic coronary plaques. Atherosclerosis. 2019 Nov;290:94-102. doi: 10.1016/j.atherosclerosis.2019.09.023. Epub 2019 Sep 28. PubMed PMID: 31604172; PubMed Central PMCID: PMC6878982.
  15. Martino N, Kwok SJJ, Liapis AC, Forward S, Jang H, Kim HM, Wu SJ, Wu J, Dannenberg PH, Jang SJ, Lee YH, Yun SH. Wavelength-encoded laser particles for massively multiplexed cell tagging. Nat Photonics. 2019 Oct;13(10):720-727. doi: 10.1038/s41566-019-0489-0. Epub 2019 Jul 22. PubMed PMID: 32231707; PubMed Central PMCID: PMC7104740.
  16. Xiong Q, Wang N, Liu X, Chen S, Braganza CS, Bouma BE, Liu L, Villiger M. Constrained polarization evolution simplifies depth-resolved retardation measurements with polarization-sensitive optical coherence tomography. Biomed Opt Express. 2019 Oct 1;10(10):5207-5222. doi: 10.1364/BOE.10.005207. eCollection 2019 Oct 1. PubMed PMID: 31646042; PubMed Central PMCID: PMC6788597.
  17. Hariri LP, Adams DC, Applegate MB, Miller AJ, Roop BW, Villiger M, Bouma BE, Suter MJ.Distinguishing Tumor from Associated Fibrosis to Increase Diagnostic Biopsy Yield with Polarization-Sensitive Optical Coherence Tomography. Clin Cancer Res. 2019 Sep 1;25(17):5242-5249. doi: 10.1158/1078-0432.CCR-19-0566. Epub 2019 Jun 7. PubMed PMID: 31175092; PubMed Central PMCID: PMC6726561.
  18. Kwok SJJ, Martino N, Dannenberg PH, Yun SH. Multiplexed laser particles for spatially resolved single-cell analysis. Light Sci Appl. 2019;8:74. doi: 10.1038/s41377-019-0183-5. eCollection 2019. PubMed PMID: 31645920; PubMed Central PMCID: PMC6804532.
  19. Van Zandvoort LJC, Otsuka K, Bouma BE, Daemen J. Intracoronary polarimetry of a honeycomb-like structure. EuroIntervention. 2019 Aug 13;. doi: 10.4244/EIJ-D-19-00431. [Epub ahead of print] PubMed PMID: 31403462; PubMed Central PMCID: PMC7238317.
  20. Liu Y, Jassim F, Braaf B, Khoueir Z, Poon LY, Ben-David GS, Papadogeorgou G, Tsikata E, Simavli H, Que C, Lee R, Shieh E, Vakoc BJ, Bouma BE, de Boer JF, Chen TC. Diagnostic Capability of 3D Peripapillary Retinal Volume for Glaucoma Using Optical Coherence Tomography Customized Software. J Glaucoma. 2019 Aug;28(8):708-717. doi: 10.1097/IJG.0000000000001291. PubMed PMID: 31180936; PubMed Central PMCID: PMC6727946.
  21. Khoueir Z, Jassim F, Braaf B, Poon LY, Tsikata E, Chodosh J, Dohlman CH, Vakoc BJ, Bouma BE, de Boer JF, Chen TC. Three-Dimensional Optical Coherence Tomography Imaging For Glaucoma Associated With Boston Keratoprosthesis Type I and II. J Glaucoma. 2019 Aug;28(8):718-726. doi: 10.1097/IJG.0000000000001280. PubMed PMID: 31169563; PubMed Central PMCID: PMC6727947.
  22. Ramier A, Tavakol B, Yun SH. Measuring mechanical wave speed, dispersion, and viscoelastic modulus of the cornea using optical coherence elastography. Opt Express. 2019 Jun 10;27(12):16635-16649. doi: 10.1364/OE.27.016635. PubMed PMID: 31252887; PubMed Central PMCID: PMC6825608.
  23. Kwok SJJ, Forward S, Wertheimer CM, Liapis AC, Lin HH, Kim M, Seiler TG, Birngruber R, Kochevar IE, Seiler T, Yun SH. Selective Equatorial Sclera Crosslinking in the Orbit Using a Metal-Coated Polymer Waveguide. Invest Ophthalmol Vis Sci. 2019 Jun 3;60(7):2563-2570. doi: 10.1167/iovs.19-26709. PubMed PMID: 31212308; PubMed Central PMCID: PMC6586079.
  24. Seiler TG, Shao P, Eltony A, Seiler T, Yun SH. Brillouin Spectroscopy of Normal and Keratoconus Corneas. Am J Ophthalmol. 2019 Jun;202:118-125. doi: 10.1016/j.ajo.2019.02.010. Epub 2019 Feb 15. PubMed PMID: 30772345; PubMed Central PMCID: PMC6548649.
  25. Vasudevan S, Vo J, Shafer B, Nam AS, Vakoc BJ, Hammer DX. Toward optical coherence tomography angiography-based biomarkers to assess the safety of peripheral nerve electrostimulation. J Neural Eng. 2019 Jun;16(3):036024. doi: 10.1088/1741-2552/ab1405. Epub 2019 Mar 27. PubMed PMID: 30917357; PubMed Central PMCID: PMC6583899.
  26.  Shao P, Eltony AM, Seiler TG, Tavakol B, Pineda R, Koller T, Seiler T, Yun SH. Spatially-resolved Brillouin spectroscopy reveals biomechanical abnormalities in mild to advanced keratoconus in vivo. Sci Rep. 2019 May 16;9(1):7467. doi: 10.1038/s41598-019-43811-5. PubMed PMID: 31097778; PubMed Central PMCID: PMC6522517.
  27. Lo WCY, Uribe-Patarroyo N, Hoebel K, Beaudette K, Villiger M, Nishioka NS, Vakoc BJ, Bouma BE.Balloon catheter-based radiofrequency ablation monitoring in porcine esophagus using optical coherence tomography. Biomed Opt Express. 2019 Apr 1;10(4):2067-2089. doi: 10.1364/BOE.10.002067. eCollection 2019 Apr 1. PubMed PMID: 31086717; PubMed Central PMCID: PMC6484999.
  28. Walther J, Li Q, Villiger M, Farah CS, Koch E, Karnowski K, Sampson DD. Depth-resolved birefringence imaging of collagen fiber organization in the human oral mucosa in vivo. Biomed Opt Express. 2019 Apr 1;10(4):1942-1956. doi: 10.1364/BOE.10.001942. eCollection 2019 Apr 1. PubMed PMID: 31086712; PubMed Central PMCID: PMC6484997.
  29. Shabahang S, Forward S, Yun SH. Polyethersulfone optical fibers with thermally induced microbubbles for custom side-scattering profiles. Opt Express. 2019 Mar 4;27(5):7560-7567. doi: 10.1364/OE.27.007560. PubMed PMID: 30876318; PubMed Central PMCID: PMC6825622.
  30. Seano G, Nia HT, Emblem KE, Datta M, Ren J, Krishnan S, Kloepper J, Pinho MC, Ho WW, Ghosh M, Askoxylakis V, Ferraro GB, Riedemann L, Gerstner ER, Batchelor TT, Wen PY, Lin NU, Grodzinsky AJ, Fukumura D, Huang P, Baish JW, Padera TP, Munn LL, Jain RK. Solid stress in brain tumours causes neuronal loss and neurological dysfunction and can be reversed by lithium. Nat Biomed Eng. 2019 Mar;3(3):230-245. doi: 10.1038/s41551-018-0334-7. Epub 2019 Jan 7. PubMed PMID: 30948807; PubMed Central PMCID: PMC6452896.

Additional Publications